Amines Class 12 Notes Chemistry Chapter 13

By going through these CBSE Class 12 Chemistry Notes Chapter 13 Amines, students can recall all the concepts quickly.

Amines Notes Class 12 Chemistry Chapter 13

Amines: Amines can be considered as derivatives of ammonia, obtained by replacement of H of NH3 by alkyl /aryl group.
Amines Class 12 Notes Chemistry 1
→ Structure of Amines: Like ammonia, the N atom of amines is trivalent and Carnes an unshared pair of electrons. N orbitals in amines are sp3 hybridized and the geometry of amines is pyramidal.
Amines Class 12 Notes Chemistry 2
(Pyramidal shape of trimethylamine)

→ Classification of Amines: Amines are classified as primary (1° secondary (2°) and tertiary (3°) depending upon the no. of hydrogen atoms replaced by alkyl/aryl groups in ammonia molecule.
Amines Class 12 Notes Chemistry 3
Amines are simple if R = R’ = R”
They are termed as mixed when R, R’, R” are different.

→ Nomenclature of Amines: In the IUPAC system ‘e’ of the alkane is replaced by ‘amine’ like Alkanamine. The simplest arylamine is aniline (C6H5—NH2) or benzene amine
Amines Class 12 Notes Chemistry 4
→ Preparation of Amines:
1. Reduction of Nitro Compounds
Amines Class 12 Notes Chemistry 5
2. Ammonolysis of Alkyl Halides
Amines Class 12 Notes Chemistry 6
The order of reactivity of halides is RI > RBr > RCI.
Amines Class 12 Notes Chemistry 7
3. Reduction of Nitriles
Amines Class 12 Notes Chemistry 8
4. Reduction of amides
Amines Class 12 Notes Chemistry 9
5. Gabriel Phthalimide Synthesis: This method is used to prepare pure primary amines. Aromatic amines cannot be prepared by this method.
Amines Class 12 Notes Chemistry 10
Hoffman Bromamide Degradation Reaction: Primary amines are obtained when an amide is treated with Br2 in an aqueous solution of NaOH.
Amines Class 12 Notes Chemistry 11
Physical Properties:

  1. Lower aliphatic amines are gases with a fishy odour. Primary amines with three or more C atoms are liquids and still higher ones are solids.
  2. Lower aliphatic amines are soluble in water because they can form H-bonds with water molecules. Higher amines are essentially insoluble in water.
  3. The order of boiling points of isomeric amines is Primary > Secondary > Tertiary. It is due to the presence of intermolecular H-bonding which is more in primary amines (due to the presence of two H- atoms attached to N than only one in secondary amines), less in 2° amines and absence in tertiary amines.
    Amines Class 12 Notes Chemistry 12

Chemical Reactions:
1. Basic character of Amines: Amines being basic in character (Lewis bases) react with acids to form salts.
Amines Class 12 Notes Chemistry 13
The basic character of amines can be better understood in terms of their PKb and kb values as explained below:
Amines Class 12 Notes Chemistry 14
Amines Class 12 Notes Chemistry 15
The larger the value of Kb or lower the value of PKb, the stronger is the base. PKb value of ammonia is 4.75. Aliphatic amines are stronger bases than ammonia due to the + I-effect of alkyl groups. The availability of lone pair of electrons on N increases. On the other hand, aromatic amines are weaker bases than ammonia due to the electron-withdrawing nature of the aryl group. The PKb values of few amines are given below:

Table: PKb values of Amines in Aqueous Phase:

Name of amine PKb
Methenamine 3.38
N-Methylmethanamine 3.27
N, N-Dimethylmethanamine 4.22
Ethanamine 3.29
N-Ehtylethamine 3.25
Benzenamine 9.38
Phenylmethanamine 4.70
N-Methylaniline 9.30
N, N-Dimethylaniline 8.92

Besides the + I or – I effect, the interplay of other factors like solvation effect, steric hindrance etc. affect the basic strength of amines.

→ Structure-Basicity Relationship of Amines: The basicity of amines is related to their structure. The basic character of an amine depends upon the ease of formation of the cation by accepting a proton from the acid.

The more stable the cation is relative to the amine, the more basic is the amine.
(a) Alkamines versus Ammonia
Let us consider the reaction of an alkanamine and ammonia with a proton to compare their basicity.
Amines Class 12 Notes Chemistry 16
Due to the electron releasing nature of the alkyl group, it (R) pushes electrons towards nitrogen and thus makes the unshared electron pair more available for sharing with the proton. Moreover, the substituted ammonium ion formed from the amine gets stabilised due to dispersal of the positive charge by the +1 effect of the alkyl group. Hence, alkylamines are stronger bases than ammonia.

Thus the basic nature of aliphatic amines should increase with the increase in the number of alkyl groups. This trend is followed in the gaseous, phase. The order of basicity of amines in the gaseous phase follows the expected order: tertiary amine > secondary amine > primary amine > NH3.

The trend is not regular in the aqueous state as evident by their PKb values given in Table. In the aqueous phase, the substituted ammonium cations get stabilised not only by the electron releasing effect of the alkyl group (+1) but also by hydrogen bonds and solvation with water molecules. The greater the size of the ion, the lesser will be the solvation and the less stabilised the ion. The order of stability of ions are as follows:
Amines Class 12 Notes Chemistry 17
Decreasing order of extent of H-bonding in water and stabilization by solvation: Greater the stability of the substituted ammonium cation, the stronger base is the corresponding amine. Thus the order of basicity of aliphatic amines should be primary > secondary > tertiary, which is opposite to the inductive effect based order. Secondly, when the alkyl group is small like – CH3 group, there is no steric hindrance to H-bonding.

In case the alkyl group is bigger than the CH3 group, there will be some steric hindrance to H-bonding. Therefore, the change of nature of the alkyl group, e.g., from CH3 to – C2H5 results in a change in the order of basic strength. Thus, there is a subtle interplay of the inductive effect, solvation effect and steric hindrance of the alkyl group which decides the basic strength of alkylamines in the aqueous state.

The order of basic strength in the case of methyl-substituted amines and ethyl substituted amines in an aqueous solution is as follows:
(C2H5)2 NH > (C2H5)3N > C2H5NH2 > NH3
(CH3)2NH > CH3NH2 > (CH3)3N > NH3

(b) Arylamine Vs Ammonia: High value of PKb of aniline suggests that it is a much weaker base than aliphatic amines or even ammonia. It is due to the resonance shown by aniline.
Amines Class 12 Notes Chemistry 18
Aniline is a resonance hybrid of 5 canonical structures out of which there is no lone pair of electrons available for sharing on N in II, III and IV structures. It results in the unshared electron pair on N being in conjugation with the benzene ring making it less available for protonation.

On the other hand, aclidinium ion obtained by accepting a proton can have only two resonating structures (Kekule) as shown below:
Amines Class 12 Notes Chemistry 19
The greater the no, of resonating structures, the greater is the stability. Thus aniline is more resonance stabilized than anilinium ion. Hence the proton acceptability or the basic nature of aniline and other aromatic amines would be less than ammonia.

In the case of substituted aniline, electron-releasing groups like – OCH3 – CH3 increase the basic strength whereas electron-withdrawing groups like – NO2, – SO3H, – COOH, – X decrease it.
Thus (C2H5)2 NH > C2H5NH2 > NH3 > C6H5NH2

2. Alkylation: Amines undergo alkylation with alkyl halides.
Amines Class 12 Notes Chemistry 20
3. Acylation: Aliphatic and aromatic primary and secondary amines react with acid chlorides, anhydrides and esters by a nucleophilic substitution reaction. This reaction is known as acylation.

It is the replacement of H of – NH2 group
or
Amines Class 12 Notes Chemistry 21
group by the acyl group.
Amines Class 12 Notes Chemistry 22
Amines Class 12 Notes Chemistry 23
The reaction of amines with benzoyl chloride (CH5 COCl) is called Benzoylation.
Amines Class 12 Notes Chemistry 24
4. Carbylamine reaction: It is a test of primary amines-both aliphatic and aromatic.
Amines Class 12 Notes Chemistry 25
5. Reaction with Nitrous acid: All the three classes of amines react differently with nitrous acid, HNO2 (prepared in situ from HCl + NaNO2)
Amines Class 12 Notes Chemistry 26
Amines Class 12 Notes Chemistry 27
Secondary and tertiary amines react differently.

6. Reaction with aryl sulphonyl chloride: Benzensulphonyl chloride (C6H5SO2Cl) called Hinsberg’s reagent reacts with 1° and.2° amines.
Amines Class 12 Notes Chemistry 28
(c) Tertiary amines (R3N) do not react with benzene sulphonyl chloride. This property of 1°, 2° and 3° amines is made use of in their distinction and separation Now in place of benzene sulphonyl chloride,

p-toluenesulphonyl chloride is used.
Amines Class 12 Notes Chemistry 29
7. Electrophilic Substitution: NH2 group fused in the ring is a powerful activating group and is ortho and para directing.
(a) Bromination:
Amines Class 12 Notes Chemistry 30
Protection of the highly activating -NH2 group can be done by acetylation with acetic anhydride in which case only monobromo substituted aniline is the product.
Amines Class 12 Notes Chemistry 31
The lone pair of electrons on N of acetanilide interacts with oxygen atom due to resonance as shown below:
Amines Class 12 Notes Chemistry 32
Hence the lone pair of electrons on nitrogen is less readily available for donation to the benzene ring by resonance. Thus the activating effect of – NHCOCH3 is less than that of the – NH2 group.

(b) Nitration: Direct nitration of aniline yields tarry oxidation products in addition to nitro derivatives.
Amines Class 12 Notes Chemistry 33
However, by protecting the amino group by acetylation reaction with acetic anhydride the nitration can be controlled and the para nitro derivative obtained as the major product.
Amines Class 12 Notes Chemistry 34
(c) Sulphonation:
Amines Class 12 Notes Chemistry 35
Aniline does not undergo Friedel Crafts reaction (alkylation and acetylation) due to the salt formation with AlCl3– the Lewis acid-which is used as a catalyst. The N of -NH2 acquires a positive charge and hence acts as a strong deactivating group for further reaction.

Diazonium Salts are of the type Ar N2+ X where Ar stands for an aryl group and X can be Cl, Br, HSO4, BF4etc. N2+ group is called the diazonium group.

C6H5 N2+Cl is called benzene diazonium chloride and C6H5 N2+ HSO4is known as benzene diazonium hydrogen sulphate. The stability of the arene diazonium ion is explained on the basis of resonance.
Amines Class 12 Notes Chemistry 36
Method of Preparation:
Amines Class 12 Notes Chemistry 37
Physical Properties:
1. It is a colourless crystalline solid.
2. It is readily soluble in cold water and stable in it but reacts with water when warmed.
3. It decomposes easily in the dry state. Therefore it is used immediately after its preparation and is not stored.

Chemical Reactions A: Reactions involving displacement of Nitrogen -N2+ group is a very good leaving group. Therefore, it is substituted by other groups such as Cl, Br, I, CN and OH which displace nitrogen from the aromatic ring.
1. Replacement by halide or cyanide ion: Sandmeyer Reaction
Amines Class 12 Notes Chemistry 38
Alternatively, chlorine or bromine can also be introduced in the benzene ring by treating diazonium salt solution with corresponding halogen acid in the presence of copper powder. This is referred to as the Gatterman reaction.
Amines Class 12 Notes Chemistry 39
The yield in the Sandmeyer reaction is found to be better than the Gattermann reaction.

2. Replacement by Iodide Ion: Iodine is not easily introduced into the benzene ring directly, but, when the diazonium salt solution is treated with potassium iodide, iodobenzene is formed.
Ar N2+ Cl + KI → Arl + KCl + N2

3. Replacement by Fluoride Ion: When arene diazonium chloride is treated with fluoroboric acid, arene diazonium fluoroborate is precipitated which on heating decomposes to yield aryl fluoride.
Amines Class 12 Notes Chemistry 40
4. Replacement by H: Certain mild reducing agents like hypophosphorous acid (phosphinic acid) or ethanol reduce diazonium salts to arenes and themselves get oxidised to phosphorous acid and ethanol, respectively.
Ar N2+ Cl + H3PO2 + H2O → ArH + N2 + H3PO3 + HCl
Ar N2+ Cl + CH3CH2OH → ArH + N2 + CH3CHO + HCl

5. Replacement by hydroxyl group: If the temperature of the diazonium salt solution is allowed to rise up to 283 K, the salt gets hydrolysed to phenol.
Ar N2+ Cl + H2O → ArOH + N2 + HCl

6. Replacement by – NO2 group: When diazonium fluoroborate is heated with aqueous sodium nitrite solution in the presence of copper, the diazonium group is replaced by the NO2 group.
Amines Class 12 Notes Chemistry 41
(B) Reactions involving retention of diazo group: Coupling Reactions
(a) Reaction with Phenol in the presence of a weakly alkaline medium results in the formation of p-hydroxy azobenzene which is an orange dye.
Amines Class 12 Notes Chemistry 42
(b) Reaction with aniline: It reacts with aniline in a weakly acidic medium to form p-amino azobenzene (yellow dye)
Amines Class 12 Notes Chemistry 43
→ Importance of Diazonium salts in the synthesis of Aromatic Compounds: These salts are very good intermediates used to introduce – F, – Cl, – Br,-I, – CN, – OH, – NOz groups into the benzene ring. Ar-F or Ar-I cannot be prepared by direct halogenation. The cyanobenzene which cannot be prepared by the SN reaction of chlorobenzene can be easily obtained from diazonium salts. These compounds are useful for preparing several azo dyes by coupling reactions.

Hepatitis Viruses | Hepatitis Viruses Types, Laboratory Diagnosis

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Hepatitis Viruses | Hepatitis Viruses Types, Laboratory Diagnosis

The term viral hepatitis refers to a primary infection of the liver, hepatitis viruses consists of types A, B, C, D, E and G. Except for type B which is a DNA virus all the others are RNA viruses. Two types of viral hepatitis had been recognised. Type one affects mainly children and young adults and transmitted by the fecal-oral route called as infective or infectious hepatitits or type A hepatitis.

Second type transmitted mainly by receiving serum inoculation or blood transfusion named as homologous serum jaundice, serum hepatitis transfusion hepatitis or type B hepatitis.

Type A Hepatitis (HAV)

HAV is a 27nm non enveloped RNA virus belonging to the picorna virus family. It is designated as ‘entero virus 72’, HAV is recognised as new genus ‘Hepatovirus’. It can be grown in human and simian cell cultures and is the only human hepatitis virus which can be cultivated in vitro.

HAV transmission is by the fecal oral route. Infection is by ingestion. The virus multiplies in the intestinal epithelium and reaches the liver by hematogenous spread. Once jaundice develops, it is rarely detectable in feces. The incubation period is 2-6 weeks. The clinical disease consists of two stages the prodromal and
the icteric stage. The onset may be acute with fever, malaise, anorexia, nausea, vomiting and liver tenderness.

These usually subside with the onset of jaundice. Recovery is slow, over a period of 4-6 weeks. The disease is milder in children. Type A hepatitis caused by contaminated food, water or milk. Over crowding and poor sanitation favour its spread.

Laboratory Diagnosis

Diagnosis of type A hepatitis may be made by demonstration of the virus or its antibody. Virus can be visualized by Immunelectron Microscopy (IEM) in fecal extracts during the late incubation period.

IgM anti-HAV antibody appears during the late incubation period disappears after 3-4 months. IgG peaks in 3-4 months and persists much longer for life. ELISA kits for detection of IgM and IgG antibodies are available.

A safe and effective formalin inactivated, alum conjugaged vaccine containing HAV grown in human diploid cell culture is used. Course consists of two intra muscular injections of the vaccine. Protection begins 4 weeks after injection and lasts for 10 to 20 years. No specific antiviral drug is available.

Type B Hepatitis (HBV)

HBV is a 42nm DNA virus with an outer envelope and an inner core 27nm in diameter. Enclosing the viral genome and a DNA polymerase. It belongs to the family Hepadna Viridae HBV is ‘Hepadna Virus type 1’. Australia antigen was found to be associated with serum hepatitis. It was the surface component of HBV, so named as hepatitis B surface antigen (HBsAg).

3 types of particles are visualized, most abundant form is a spherical particle, 22nm in diameter. The second type of particle is filamentous or tabular with a diameter of 22nm both are antigenically identical. Third type of particle are fewer in number, is a double walled spherical structure 42 nm in diameter. This particle is the complete hepatitis B virus, known as Dane particle.

The envelope proteins expressed on the surface contains hepatitis B surface antigen (HBsAg). HBsAg consists of two major polypeptides, one of which is glycosylated. The nucleocapsid or core contains hepatitis B core antigen (HBcAg A) (Figure 10.5). Third antigen called the hepatitis B e antigen (HBeAg)
is a soluble non particulate nucleocapsid protein.
Hepatitis Viruses img 1

The nucleocapsid encloses the viral genome consisting of two linear strands of DNA held in a circular configuration. One of the strands is incomplete (+ strand) DNA appears partially double stranded and partially single stranded. Associated with the + strand is a viral DNA polymerase (has both DNA dependent
DNA polymerase and RNA dependent reverse transcriptase functions).

This polymerase can repair the gap in the plus strand and render the genome fully double stranded. Natural infection occurs only in humans. The virus is maintained in carriers whose blood contains circulating virus for long periods. Carriers are of two categories, the highly infectious super carriers and the simple carriers. Former have high titre HBsAg along with HBsAg, DNA polymerase and HBV in ciruculation.

Simple carriers have low infectivity and low titre HBsAg in blood. HBV is a blood borne virus and the infection is transmitted by parenteral, sexual and perinatal models. The virus may also be present in other body fluids and excretions such as saliva, breast milk, semen, vaginal secretions, urine bile and feces of these semen and saliva are known to transmit the infection very commonly.

Transfusion of carrier blood once, the most widely known mode of infection has largely been eliminated by donor screening that is strictly enforced. Infection by direct contact with open skin lesions such as pyoderma, eczema, cuts and scratches is very common among young children in developing countries.

Certain groups and occupations carry a high risk of infection. These include medical and paramedical staff of blood banks, dialysis units, barbers, sex workers. The incubation period is long about 1-6 months. The onset is insidious and fever is not prominent.

Extra hepatic complications like arthralgia, urticaria and glomerulonephritis may occur. About 90-95% of adults with acute hepatitis B infection recover within 1-2months of onset and eliminate the virus from the body. They may be Asymptomatic carriers or may progress to recurrent or chronic liver disease.

Laboratory Diagnosis

Serology

Diagnosis of hepatitis B depends on the serological demonstration of the viral markers. HBsAg is the first marker to appear in blood after infection, being detectable. It remains in circulation throughout the symptomatic course of the disease (2-6months). Anti HBs is the protective antibody.

HBcAg is not demonstrable in circulation because it’s enclosed within the HBsAg coat but its antibody, anti HBc appears in serum a week or two after the appearance of HBsAg.

As anti HBc remains life long, it serves as a useful indicator of prior infection with HBV. HBeAg appears in blood concurrently with HBsAg, indicating the high infectivity. Molecular methods such as DNA: DNA hybridization and PCR at present used for HBV DNA testing are highly sensitive and quantitative.

Immunization

Both passive and active methods of immunization are available. Active immunization is more effective. The currently preferred vaccine is genetically engineered by cloning the S gene for HBV in Baker’s yeast. A special vaccine containing all antigenic components of HBsAg (Pre-S1, Pre-S2 and s) has been developed. No specific antiviral treatment is available for acute HBV infection.

Herpes Viruses Herpes Viruses | Herpes Viruses Structure, Classification, Clinical Features, Laboratory Diagnosis

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Herpes Viruses | Herpes Viruses Structure, Classification, Clinical Features, Laboratory Diagnosis

The herpes virus family contains more than a hundred species of enveloped DNA viruses that affect humans and animals.

Structure

The herpes virus capsid is icosahedral, composed of 162 capsomers and enclosing the core containing the linear double stranded DNA genome. The nucleocapsid is surrounded by the lipid envelope derived from the host cell. The envelope carries surface spikes (Figure 10.4). Teguments are present in between the envelope and capsid. The enveloped virion measures about 200nm and the naked virion about 100 nm in diameter.
Herpes Viruses img 1

Classification

Herpes virus belongs to the family Herpesviridae.

i. Alpha herpes viruses

They have relatively short replicative cycle (12-18 hours) and a variable host range. They cause latent infection in sensory ganglia. Example: Herpes simplex virus and varicella zoster virus.

ii. Beta herpes viruses

They replicate slowly (more than 24 hours) and have a narrow host range, grow well in fibroblasts. They cause latent infection of salivary gland and other organs. Example: Cytomegalovirus.

iii. Gamma herpes viruses

They have a narrow host range and replicate in lymphoblastoid cells. They are specific for either B or T lymphocytes and causes latent infection in lymphoid tissue Example: Epstein – Barr Virus. Eight different types of herpes viruses are known whose primary hosts are humans. They have been designated as Human herpes virus type 1-8.

1. Herpes Simplex

The herpes simplex virus (HSV) occurs naturally only in humans, but it can produce experimental infection in laboratory animals. There are two types of the herpes simplex virus. HSV type 1 (Human herpes virus type 1) is isolated from lesions in and around the mouth and is transmitted by direct contact or droplet spread from carrier. HSV type 2 (Human herpes virus type 2 or HHV type 2) is responsible for the genital herpes infections transmitted venereally.

Pathogenesis

Herpes simplex is one of the most common viral infection in humans, the sources of infection are saliva, skin lesions or respiratory secretions. In type 2, transmission occurs by close contact and may be veneral in genital herpes. The virus enters through defects in the skin or mucous membranes and multiples
locally, with cell to cell spread.

The herpes lesions are thin walled, umbilicated vesicles, the roof of which breaks down, leaving tiny superficial ulcers. They heal without scarring.

Clinical features

The clinical manifestations depend on the site of infection, age and immune status of the host and the antigenic type of the virus. They are

  • Cutaneous infections
  • Mucosal infections
  • Ophthalmic infections
  • Nervous system infections
  • Visceral infections
  • Genital infections

Laboratory diagnosis

Microscopy

Smears are prepared from the lesions, from the vesicles and stained with 1% aqueous solution of toluidine blue ‘O’ for 15 seconds. Multinucleated giant cells with faceted nuclei with ground glass chromatin (Tzanck cells) are observed.

Virus isolation

Inoculation in mice and on chick embryo CAM is insensitive. Primary human embryonic kidney, human amnion cells are susceptible, but human diploid fibroblasts are preferred. Vesicle fluid, spinal fluid, saliva and swabs may be used. Cytopathic changes may appear as early as 24-48 hrs.

Serology

Antibodies develop within a few days of infection and rise in titre of antibodies may be demonstrated by ELISA, neutralization or complement fixation tests. Chemotherapy Indoxyuridine used topically in eye and skin infection, acyclovir and vidarabine are given for deep and systemic infections.

2. Varicella Zoster

In 1889, Von Bokay had suggested that varicella (Chicken pox) and herpes zoster are different manifestations of the same virus infection. The virus is therefore called Varicella zoster virus (VZV). The chicken pox follows primary infection in a non immune individual, while herpes zoster is a reaction of the latent virus when the immunity has fallen to infective levels.

VZV is similar to the herpes simplex virus in its morphology. It can be grown in cultures of human fibroblasts human amnion or HeLa cells. Chicken pox is one of the mildest and most common of child hood infections. The disease may, occur at any age.

3. Cytomegaloviruses

Cytomegaloviruses (CMV) formerly known as salivary gland viruses are a group of ubiquitous herpes viruses of humans and animals. They are characterized by enlargement of infected cells and intranuclear inclusions.

In 1926, cytomegalia presumed to be due to viral infection was reported in the salivary glands of guinea pigs and children and the viral agent was called the ‘salivary gland virus’.

4. Epstein – Barr Virus

A number of different viruses apparently ‘Passenger Viruses’ were isolated from cultured lymphoma cells. Epstein, Barr and Achong in 1964 observed a new type of herpes virus and named it has ‘EB Virus’ affecting B lymphocytes of only human and some sub human primate B cells have receptors (CD21 molecules)
for the virus.

The source of infection is usually the saliva of infected persons who shed the virus in oropharyngeal secretions. Intimate oral contact,as in kissing, appears to be the predominant mode of transmission. This accounts for infectious mononucleosis being called as ‘The kissing disease’.

5. Human Herpes Virus Types 6, 7, 8

A herpes virus, first isolated in 1986 from the peripheral blood of patients with lympho proliforative disease called as human B lymphotropic virus, renamed as HHV – 6. HHV – 7 was isolated in 1990 from peripheral CD4 cells of a healthy person appears to be widely distributed and transmitted through saliva.

In 1994, DNA sequences presumed to represent a new herpes virus from tissues of Kaposi’s sarcoma from AIDS patients was named as HHV8. Later Kaposi’s sarcoma was identified in persons not infected with HIV and referred to as Kaposi’s Sarcomaassociated Herpes Virus (KSHV).

Cultivation of Viruses Techniques

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Cultivation of Viruses

Viruses areobligate intracellularparasites; they cannot be grown on any inanimate culture medium. Three methods are employed for the cultivation of viruses – inoculation into animals, embryonated eggs and tissue culture or cell culture.

i. Animal Inoculation

The earliest method for the cultivation of viruses causing human diseases was inoculation into human volunteers. Monkeys were used for the isolation of the polio virus by Landsteiner and Popper (1909). The embryonated hen’s egg was first used for cultivation of viruses by Good pasture (1931). The embryonated egg offers several sites for the cultivation of viruses. Non human primates provide the only method for virus cultivation. Mice are most widely employed animals in Virology.

ii. Embryonated Eggs

a. Chorioallantonic Membrane (CAM)

Inoculation on the chorioallantonic membrane produces visible lesions (pocks). Different viruses have different pock morphology. Example: variola or vaccinia

b. Allantonic Cavity

Inoculation on the allantonic cavity provides a rich yield of influenza and some paramyxo viruses.

c. Amniotic Sac

Inoculation into the amniotic sac is for the primary isolation of the influenza virus.

d. Yolk Sac

Inoculation into the yolk sac is for the cultivation of some viruses like Chlamydiae and Rickettsiae. Allantonic inoculation is employed for growing influenza virus for vaccine production (Figure 10.3).
Cultivation of Viruses img 1

iii. Tissue Culture

First tissue culture in Virology was maintained by Steinhardt and colleagues (1913) for the vaccinia virus in fragments of rabbit cornea. Bacterial contamination was the major limitation. Different types of culture used are:

a. Organ culture

Small bits of organs can be maintained, used for the isolation of some viruses.
Example: Corona virus (respiratory pathogen) cultured on tracheal ring organ culture.

b. Explant culture

Fragments of minced tissue are grown as ‘explants’. This is also known as tissue culture.
Example: Adeno virus cultured on Adenoid tissue explants.

iv. Cell Culture

Tissues are dissociated into the component cells by the action of enzymes (trypsin) or by mechanical process and are suspended in a growth medium (amino acids, vitamins, salts, glucose) supplemented with fetal calf serum of antibiotics and indicator (Phenol red).

This media is dispensed in bottles, tubes or petridishes. The cells adhere to the glass surface and on incubation divides to form a confluent monolayer sheet of cells covering the surface within about a week. The cell culture is classified into three types.

a. Primary cell cultures

In this culture, normal cells are taken from the body and cultured. They are capable of only limited growth in culture. Example: Monkey kidney, Human embryonic kidney, Chick embryo cell culture.

b. Diploid cell strains

These are cells of a single type that retain the original diploid chromosome number and serotype during serial sub cultivation for limited number of times. Example: Human fibroblast.

c. Continuous cell lines

These are single type, derived from cancer cells that are capable of continuous serial cultivation.
Example: Cells derived from cancers, such as Hela, Hep-2 and KB cell lines.

Evolutionary Origin of Viruses

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Evolutionary Origin of viruses

The origin of viruses is not known, but two theories of vital origin can be summarized as follows;

  1. Viruses may be derived from (DNA or RNA) nucleic acid components of host cells to replicate and evolve independently.
  2. Viruses may be degenerate forms of intracellular parasites.

Morphology

Size

Viruses are smaller than bacteria, known as filterable viruses vary widely in size. The largest among them is the Pox virus measuring about 300nm. The smallest virus is Parvo virus measuring about 20 nm.

Structure and Shape

The virion consists of nucleic acid surrounded by a protein coat, the capsid. The capsid with the enclosed nucleic acids is known as the nucleo capsid. The capsid is composed of a large number of capsomers. The functions of the capsid are to protect the nucleic acid from the deleterious agents and also to introduce
viral genome into host cells by adsorbing readily to cell surfaces (Figure 10.1).

Two kinds of symmetry encountered in the virus are icosahedral and helical. Virions may be enveloped or non enveloped (naked). The envelope or outer covering of viruses is derived from the host cell membrane when the progeny virus is released by budding. The envelope is lipoprotein in nature. The lipid is of host cell origin while the protein is virus coded. Protein subunits may be seen as projecting spikes on the surface of the envelope and are known as Peplomers.

Overall shape of the virus particle varies; mostly animal viruses are roughly spherical. Some are irregular and pleomorphic. The rabies virus is bullet shaped, Ebola virus is filamentous and pox viruses are brick shaped.
Evolutionary Origin of viruses img 1

Chemical Properties

Viral protein determines the antigenic specificity of the virus. Some viruses contain small amounts of carbohydrates. Most Viruses do not possess any enzymes but retro virus has a unique enzyme, such as RNA dependent DNA polymerase or transcriptase which can synthesise DNA from RNA.

Resistance

Viruses are inactivated by sunlight, UV rays and ionizing radiations. The most active antiviral disinfectants are oxidizing agents such as hydrogen peroxide, potassium permanganate and hypochlorites. Organic iodine compounds are actively virucidal.

Chlorination of drinking water kills most viruses but its efficacy is influenced by the presence of organic matter. Some viruses such as hepatitis virus, polio viruses are relatively resistant to chlorination.

Viral Multiplication

The genetic information necessary for viral replication is contained in the viral nucleic acid, and also depends on the synthetic machinery of the host cell for replication.

The Viral replication cycle can be divided into six steps and they are as follows,

  1. Adsorption or attachment,
  2. Penetration,
  3. Uncoating
  4. Bio synthesis
  5. Maturation and
  6. Release.

1. Adsorption

Virions may come into contact with cells by random collision but adsorption takes place only if there is an affinity between the virus and the host. The cell surface should contain specific receptor site for the virus to attach on to it.

2. Penetration

Bacteria possess rigid cell walls, only the viral nucleic acid is introduced intracellularly by a complex mechanism. Animal cells do not have rigid cell walls and the whole virus can enter and virus particles may be engulfed by a mechanism resembling phagocytosis, a process known as ‘Viropexis’. In case of the enveloped viruses, the viral envelope may fuse with the plasma membrane of the host cell and release the nucleocapsid into the cytoplasm.

3. Uncoating

Release of the viral nucleic acid from the capsid into the host cell. With most viruses, uncoating is affected by the action of lysosomal enzymes of the host cell.

4. Biosynthesis

Virus can synthesise viral nucleic acid, capsid protein and also the enzymes necessary in the various stages of viral synthesis, assembly and release. In addition certain regulator proteins are also synthesized. Most DNA viruses synthesise their nucleic acid in the host cell nucleus. Most RNA viruses synthesise all their components in the cytoplasm.

5. Maturation

Assembly of daughter virions follows the synthesis of viral nucleic acid and proteins. Virions assembly may take place in the host cell nucleus or cytoplasm. Herpes and adeno viruses are assembled in the nucleus, while picorna and pox viruses are assembled in the cytoplasm.

6. Release

In case of bacterial viruses, the release of progeny virions takes place by the lysis of the infected bacterium. However, in the case of animal viruses, release usually occurs without cell lysis. Eclipse phase is from the stage of penetration till the appearance of mature daughter virions. The virus cannot be demonstrated inside
the host cell. The virus seems to disappear (Figure 10.2).
Evolutionary Origin of viruses img 2

Viroids

Viriods are small, single stranded covalently closed circular RNA molecules existing as highly base paired rod like structure. The viroid depends on the host for replication. These are responsible for some of the transmissible plant diseases.

Prion

Prions are small proteinaceous infectious agents without genetic material. These are responsible for a number of degenerative brain diseases (Example: Creutzfeldt) and hereditary dementia.

Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry Chapter 12

By going through these CBSE Class 12 Chemistry Notes Chapter 12 Aldehydes, Ketones and Carboxylic Acids, students can recall all the concepts quickly.

Aldehydes, Ketones and Carboxylic Acids Notes Class 12 Chemistry Chapter 12

→ Aldehydes and Ketones both contain carbonyl C = O group and hydrogen while in Ketones, it is bonded to two carbon atoms.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 1
→ Carbon in both aldehydes and Ketones is sp2 hybridized:
If the Carbonyl group Carboxylic acid. is attached to -OH group, it is called Carboxylic Acid
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 2
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 3
Common names:
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 4
IUPAC Names: The IUPAC names of open chain aliphatic aldehydes and ketones are derived from the names of the corresponding alkanes by replacing the ending – e with – al and – one respectively.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 5
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 6
Table: Common and IUPAC Names of Some Aldehydes and Ketones:
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 7
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 8
→ Structures of the Carbonyl group): The carbonyl carbon atom is sp2 hybridized and forms three sigmas (σ) bonds.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 9
C = O is polarised due to the higher electronegativity of oxygen relative to carbon. Hence the carbonyl carbon is an electrophilic (Lewis acid) and carbonyl oxygen, a nucleophile (Lewis base) centre.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 10
The carbonyl group is highly polar.

Preparation of Aldehydes and Ketones:
1. Aldehydes are prepared by the partial oxidation of primary alcohols while ketones are obtained from secondary alcoholic.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 11
2. Catalytical dehydrogenation of primary alcohols with red hot Cu gauze at 573 K gives aldehydes and secondary alcohols give ketones.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 12
3. From ozonolysis of alkenes:
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 13
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 14
4. From Alkynes from hydration:
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 15
Preparation of Aldehydes only
1. Rosenmund’s Reaction: Reduction of acid Chlorides with H2 and Pd/BaS04 catalyst in boiling xylene solution.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 16
2. From Nitriles and esters: Stephen Reaction
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 17
Esters are reduced to aldehydes with DIBAL-H [diisobutyl- aluminium hydride]
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 18
3. From Aromatic hydrocarbons:
(a) With chromyl chloride (Cr02Cl2): Etard’s Reaction
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 19
(b) With Chromic Oxide (Cr03)
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 20
(c) By side-chain chlorination followed by hydrolysis
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 21
(d) By Gatterman-Koch Reaction
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 22
Methods of Preparation for Ketones:
1. From acid chlorides
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 23
2. From nitriles
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 24
3. From benzene: By Friedel-Crafts acylation:
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 25
→ Physical Properties:
1. Methanal is a gas at room temperature. Ethanol is a volatile liquid. Other aldehydes and ketones are liquid or solid at room temperature.

2. B. Pts of aldehydes and ketones are higher than hydrocarbons and ethers of comparable molecular masses due to weak molecular association in aldehydes and ketones due to dipole-dipole interactions. Their B.Pts. are lower than those of alcohols due to the absence of H-bonding.

The following compounds of molecular masses 58 and 60 are ranked in order of increasing boiling points.

  B.Pt (K) M.Mass
n-Butane 273 58
Methoxyethane 281 60
Propanal 322 58
Aoelone 329 58
Propan-1-ol 370 60

3. The lower members of aldehydes and ketones such as methanal, ethanal and propanone are miscible with water in all proportions because they form H-bonds with water.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 26
Solubility of aldehydes and ketones decreases rapidly on increasing the length of the alkyl group.

4. The lower aldehydes have a sharp pungent odour. As molecular mass increases, the odour becomes less pungent and more fragrant.

Chemical Reactions of Aldehydes and Ketones:
1. Nucleophilic addition Reactions: On the attack of a nucleophile on the carbonyl carbon, the hybridization of C changes from sp2 to sp3.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 27
Aldehydes are more susceptible to nucleophilic addition reactions than ketones due to steric and electronic factors.

The reactivity of aldehydes and ketones towards nucleophilic addition reactions is
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 28
The polarity of the carbonyl group is reduced in benzaldehyde due to resonance and hence it is less reactive than propanal.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 29
1. Addition of Hydrogen cyanide (HCN):
HCN + OH- ⇌ -CN + H2O
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 30
2. Addition of Sodium bisulphite (NaHSO3):
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 31
3. Addition of Grignard’s reagent: They give 1°, 2°, 3° alcohols.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 32
4. Addition of alcohols: Acetals/Ketals are formed
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 33
Ketones, under similar conditions, react with ethylene glycol to form cyclic products known as ethylene glycol ketals.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 34
5. Addition of ammonia and its derivatives [Addition- Elimination].
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 35
Z = alkyl, aryl, OH, NH2, C6H5NH, NHCONH2 etc.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 36
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 37
[Table: Some N-Substituted Derivatives of aldehydes and ketones
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 38
2, 4-DNP-derivatives are yellow, orange or red solids, useful for characterization of aldehydes and ketones.

2. Reduction:
1. Reduction to alcohols: Aldehydes and ketones are reduced to primary and secondary alcohols respectively by sodium borohydride (NaBH4) or lithium aluminium hydride (LiAlH4) as well as by catalytic hydrogenation.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 39
2. Reduction to hydrocarbons: The carbonyl group of aldehydes and ketones is reduced to CH2 group on treatment with zinc-amalgam and concentrated hydrochloric acid [Clemmensen reduction) or with hydrazine followed by heating with sodium or potassium hydroxide in a high boiling solvent such as ethylene glycol (Wolff-Kishner reduction).
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 40
3. Oxidation: Aldehydes differ from ketones in their oxidation reactions,
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 41
Due to the easy oxidation of aldehydes as compared to ketones, they can be distinguished from the following two steps:
1. Tollen’s test:
R—CHO + 2 [Ag(NH3)2]+ + 3 OH → RCOO + Ag (s) + 2 H2O + 4 NH3
On warming an aldehyde with freshly prepared ammonical AgNO3 solution (Tollen’s reagent), a bright silver mirror is produced.

2. Fehling’s Test: On heating an aldehyde with Fehling reagent, a reddish-brown precipitate is obtained.
RCHO + 2 Cu2+ + 5 OH → RCOO + Cu2O + 3 H2O. (red-brown ppt.)

→ Oxidation of methyl ketones by haloform reaction: All those carboxyl compounds containing the – COCH3 group respond to this test.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 42
If NaOI is used, yellow ppt. of CHI3 is formed which is used to detect the CH3C = O group.

4. Reactions due to α-hydrogen atom: α-hydrogens in aldehydes and ketones are acidic in nature due to the strong electron-withdrawing effect of the carbonyl group and resonance stabilisation of the conjugate base.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 43
1. Aldol Condensation: Aldehydes and ketones having at least one α-hydrogen undergo Aldol Condensation in the presence of dil. alkali to form β-hydroxy aldehydes (aldol) or β-hydroxy ketones [ketol] respectively.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 44
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 45
2. Cross Aldol Condensation: When aldol condensation is carried out between two different aldehydes and/or ketones, it is called Cross aldol condensation.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 46
Ketones can also be used as one component in the cross aldol condensation.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 47
5. Other Reactions:
1. Cannizzaro Reactions: Aldehydes that do not have an a- hydrogen atom, undergo self oxidation-reduction called Disproportionation reactions on treatment with concentrated alkali.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 48
2. Electrophilic substitution reactions: Aromatic aldehydes and ketones undergo electrophilic substitution reactions at the ring and the carbonyl group acts as a deactivating and meta-directing group.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 49
Uses of aldehydes and ketones

  • Formalin (aqueous solution of formaldehyde) is used to preserve biological specimen and to prepare bakelite.
  • Acetaldehyde is used to prepare acetic acid, ethyl acetate, vinyl acetate, polymers and drugs.
  • Benzaldehyde is used in perfumery and in dye industries.
  • Acetone and ethyl methyl ketone are common industrial solvents.

II. Carboxylic Acids: Carbon compounds containing a carboxylic -COOH group are called Carboxylic acids.

→ Nomenclature and Structure of Carboxylic Group: In the IUPAC system last – e of alkanes is replaced with – oic acid. For naming compounds containing more than one carboxylic group, the ending – C of the alkane is retained.

Table: Names and Structures of Some Carboxylic Acids:
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 50
→ Structure of Carboxylic Group: Because of the possible resonance structure shown below, the carboxylic carbon is less electrophilic. Then carbonyl carbon and the bonds of the carboxylic carbon lie in the plane and are separated by 120°.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 51
Methods of Preparation of Carboxylic Acids:
1. From Primary Alcohols and Aldehydes: Primary
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 52
2. From Alkyl benzenes:
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 53
3. From Nitriles and amides: By Hydrolysis
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 54
2. Due to extensive hydrogen bonding, carboxylic acid molecules get associated and thus have higher boiling points as compared to aldehydes, ketones and even alcohols of comparable molecular masses.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 55
(In vapour state are in an aprotic solvent.)

3. Simple aliphatic carboxylic acids having up to four C atoms are miscible in water the formation of hydrogen bonds with water.

The solubility decrease with an increasing number of carbon atoms.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 56
(Hydrogen bonding of RCOOH with H2O)

Chemical Reaction:
Reactions involving cleavage of O-HBond

Acidic character Reactions with metals and alkalies:
2RCOOH + 2 Na → 2 RCOO Na+ + H2 Sodium carboxylate
RCOOH + NaOH → RCOO Na+ + H2O
RCOOH + NaHCO3 → RCOO Na+ + H2O + CO2

Carboxylic acid dissociates in water to give resonance-stabilized carboxylate anion and the hydronium ion.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 57
For the above reaction:
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 58
Where Keq, is the equilibrium constant and Ka is the acid dissociation constant.
pka = – log ka

The pka of hydrochloric acid is – 7.0, whereas pka of trifluoracetic acid (tine strongest organic acid), benzoic acid, and acetic acid are 0.23, 4.19 and 4.76 respectively.

Smaller the pka, the stronger the acid.
Carboxylic acids are weaker than mineral acids, but they are stronger acids than alcohols and many simple phenols [pka for phenols is ~ 10 and for ethanol ~ 16). Carboxylate anion is more resonance stabilized than phenoxide ion as the – ve charge is spread on two oxygen atoms rather than one in phenoxide ion.

Effect of Substituents on the acidity of carboxylic acids: Electron withdrawing groups increase the acidity of carboxylic acids by stabilizing the conjugate base through delocalisation of the negative charge by inductive and/or resonance effects. Conversely, electron-donating groups decrease the acidity by destabilizing the conjugate base.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 59
The effect of the following groups in increasing acidity order is Ph < I < Br < Cl < F < CN < NO2 < CF3.

Thus the following acids are arranged in order of increasing acidity/based on pka values.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 60
Direct attachment of groups such as phenyl or vinyl to the carboxylic acid, increases the acidity of corresponding carboxylic acid, contrary to the decrease expected due to the resonance effect shown below:
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 61
This is because of the greater electronegativity of sp2 hybridised carbon to which carboxyl carbon is attached. The presence of an electron-withdrawing group on the phenyl of the aromatic carboxylic acid increases their acidity while electron-donating groups decrease their acidity.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 62
Reactions Involving Cleavage of C—OH Bond:
1. Formation of Anhydride
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 63
2. Esterification:
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 64
Mechanism of Esterification:
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 65
3. Reaction involving PCl5 PCl3 SOCl2: Thionyl chloride (SOCl2) is preferred as the other two products are gases.
RCOOH + PCl5 → R COCl + POCl3 + HCl
3RCOOH + PCl3 → 3 ROCl + H3PO3
RCOOH + SOCl2 → RCOCl + SO2 ↑ + HCl ↑.

4. Reactions with ammonia:
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 66
Reactions Involving: COOH Group:
1. Reduction:
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 67
2. Decarboxylation:
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 68
Kolbe’s Electrolysis
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 69
Substitution reactions in the hydrocarbon part:
1. Halogenation: Hell-Volhard-Zelinsky Reaction
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 70
2. Ring Substitution: —COOH group present in the ring is a deactivating group and meta-directing group. They do not, however, undergo Friedel-Craft reaction.

It is because the carboxylic group (— COOH) is a deactivating group and the catalyst aluminium chloride (Lewis acid) gets bonded to the carboxylic group.
Aldehydes, Ketones and Carboxylic Acids Class 12 Notes Chemistry 71
Uses of Carboxylic acids: Methanoic acid is used in rubber, textile, dyeing, leather and electroplating industries. Ethanoic acid is used as a solvent and as vinegar in the food industry. Hexanedioic acid is used in the manufacture of nylon-66. Esters of benzoic acid are used in perfumery. Sodium benzoate is used as a food preservative. Higher fatty acids are used for the manufacture of soaps and detergents.

Alcohols, Phenols and Ethers Class 12 Notes Chemistry Chapter 11

By going through these CBSE Class 12 Chemistry Notes Chapter 11 Alcohols, Phenols and Ethers, students can recall all the concepts quickly.

Alcohols, Phenols and Ethers Notes Class 12 Chemistry Chapter 11

→ Alcohol contains one or more hydroxyl (OH) group (s) directly attached to a carbon atom (s).
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 1
→ A Phehol contains one or more hydroxyl group (OH) attached to a carbon atom (s) of the benzene ring.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 2
→ An ether contains an alkoxy/aryloxy group (R-O/Ar-O) in place of the H atom of a hydrocarbon.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 3
Classification:

  • C2H5OH: Monhydric alcohol
  • CH2OH-CH2OH: Dihydric alcohol
  • HOH2C-CHOH-CH2OH: Trihydric alcohol
  • Alcohols, Phenols and Ethers Class 12 Notes Chemistry 4
    Alcohols, Phenols and Ethers Class 12 Notes Chemistry 5

1. Compounds containing Csp3 -OH bond: In this class of alcohols, the -OH group is attached to an sp3 hybridized carbon atom of an alkyl group. They are further classified as follows:

→ Primary, secondary and tertiary alcohols: Here -the OH group is attached to a primary, secondary and tertiary carbon atom, respectively as shown below:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 6
→ Allylic alcohols: In these alcohols, -OH group is attached to an sp3 hybridized carbon next to the carbon-carbon double bond, i.e., to an allylic carbon, e.g.,
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 7
→ Benzylic alcohols: In these alcohols, the -OH group is attached to an sp3-hybridized carbon next to an aromatic ring. For example
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 8
Allylic and benzylic alcohols may be primary, secondary or tertiary.

2. Compounds containing Csp2-OH bond: These alcohols contain -OH group bonded to a carbon-carbon double bond.
Vinylic alcohols CH2 = CH-OH
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 9
Ethers (A) Simple ethers/Symmetrical ethers (ROR)-
C2H5-O-C2H5 CH3-O-CH3.

(B) Mixed or Unsymmetrical ether (ROR’): R ≠ R’
C2H-O-CH3 C6H5-O-C2H5

Nomenclature:
(a) Alcohols: Common and I.U.P.A.C. names given below:

Table 11.1: Common and IUPAC Names of Some Alcohols:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 10
Cyclic alcohols are named using the prefix cyclo and considering the-OH group attached to C-1.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 11
(b) Phenols: The simplest hydroxy derivative of benzene is phenol, it is its common name and also an accepted IUPAC name. As the structure of phenol involves a benzene ring, in its substituted compounds the terms ortho (1, 2- disubstituted), meta (1, 3-disubstituted) and para (1, 4-disubstituted) are often used in the common names.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 12
Dihydroxy derivatives of benzene are known as 1, 2-, 1, 3- and 1, 4-benzenediol.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 13
(c) Ethers: Common names of others are derived from the names of alkyl/aryl groups written as separate words in alphabetical order and adding the word ‘ether’ at the end. For example, CH3OC2H5 is ethyl methyl ether. If both the alkyl groups are the same, the prefix ‘di’ is added before the alkyl group. For example, C2H5OC2H5 is diethyl ether.

According to the IUPAC system of nomenclature, others are regarded as hydrocarbon derivatives in which a hydrogen atom is replaced by an -OR or -OAr group, where R and Ar represent alkyl and aryl groups, respectively. The larger (R) group being chosen as the parent hydrocarbon. The names of a few others are given as examples in the Table below:

Table 11.2: Common and IUPAC Names of Some Ethers:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 14
Structures of Functional Groups-In alcohols, the oxygen of the -OH group is attached by a sigma (a) bond formed by the overlap of an sp3 hybridized orbital of carbon with an sp3 hybridized orbital of oxygen.

The figure below depicts the structural aspects of the methanol, phenol and methoxymethane.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 15
Structures of methanol, phenol and methoxymethane.

The bond angle in alcohols is slightly less than the tetrahedral angle (109°28′) which is due to repulsion between the unshared electron pairs of oxygen.

Alcohols and Phenols:
Preparation of Alcohols:
1. From alkenes:
1. By acid-catalysed hydration
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 16
Mechanism:
→ Step I: Protonation of alkene to form carbocation by the electrophilic attack of H3O+ ion,
H2O + H+ → H3O+
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 17
→ Step II: Nucleophilic attack of water on carbocation
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 18
→ Step III: Deprotonation to form an alcohol
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 19
3. By hydroboration-oxidation: Borane (BH3) is an electrophile since it is electron-deficient. Addition product formed is oxidized to alcohols by H2O and aq. NaOH.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 20
Addition of water proceeds against the Markovnikor rule.

2. From Carbonyl Compounds:
1. Reduction of aldehydes and Ketones:
(a) Hydrogen gets added in the presence of a catalyst (catalytical hydrogenation) like Pd, Pt, Ni (all finely. divided)
(b) By treating carbonyl compounds with sodium borohydride or lithium aluminium hydride (Li A1H4).

Aldehydes give primary alcohols whereas ketones yield secondary alcohols.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 21
2. Reduction of carboxylic acids and esters:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 22
3. From Gngnard reagents:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 23
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 24
Preparation of Phenols:
1. From haloarenes
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 25
2. From benzene Suiphonic acid
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 26
3. From diazonium salts
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 27
4. From Cumene
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 28
→ Physical Properties of Alcohols and Phenols: The properties of alcohols and phenols are chiefly due to the hydroxyl group. The nature of alkyl and aryl groups simply modify their properties.

→ Boiling Points: The boiling points of alcohols and phenols increase With the increase in the number of carbon atoms (increase in van der Waals forces). In alcohols, the boiling points decrease with the increase of branching in the carbon chain (because of a decrease in van der Waals forces due to a decrease in surface area).

The -OH group is alcohols and phenols is involved in intermolecular hydrogen bonding as shown below:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 29
The high boiling points of alcohols are mainly due to the presence of intermolecular hydrogen bonding in them which is lacking in ethers and hydrocarbons.

→ Solubility: Solubility of alcohols and phenols in water is due to their ability to form hydrogen bonds with water molecules. The solubility decreases with an increase in the size of alkyl/aryl (hydrophobic) groups. Lower alcohols are miscible with water in all proportions.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 30
→ Chemical Reactions: Alcohols react both with nucleophiles and electrophiles. The bond between O-H is broken when alcohols react as nucleophiles.
1. Alcohols, Phenols and Ethers Class 12 Notes Chemistry 31

2. The bond between C-O is broken when they react as electrophiles. Protonated alcohols react in this manner.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 32
Based on the cleavage of O-H and C-O bonds, the reactions of alcohols and phenols may be divided into two groups.
(a) Reactions involving cleavage of O-H bond:
1. Acidity of alcohols and phenols

→ Reactions with metals:
2R-O-H + 2 Na → 2 RONa + H2
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 33
→ Reaction with Aq. NaOH: Phenols react with aq. NaOH
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 34
→ Alcohols and Phenols are Bronsted acids i.e., they can donate a proton to a stronger base [: B]
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 35
→ The acidity of alcohols:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 36
Due to the electron-releasing group (-CH3, -C2H5) electron density on oxygen increases and the polarity of the O-H bond decreases. This decreases the acid strength.

Alcohols are, however, weaker acids than water.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 37
Water is a better proton donor (i.e., stronger acid) than alcohol. Alkoxides (e.g. sodium ethoxide) is a better proton-acceptor than hydroxide ion, which suggests that alkoxides are stronger bases. (Sodium ethoxide is a stronger base than sod. hydroxide).

Alcohols act as Bronsted bases as well. It is due to the presence of unshared electron pairs on oxygen, which makes them proton acceptors.

→ The acidity of Phenols: The reactions of phenols with metals like Na, Al and NaOH indicate their acidic nature. The -OH group in phenols is directly attached to the sp2 hybridized carbon of benzene ring which acts as an electron-withdrawing group.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 38
The reaction of phenol with aqueous sodium hydroxide indicates that phenols are stronger acids than alcohols and water. Let us examine how a compound in which the hydroxyl group attached to an aromatic ring is more acidic than the one in which the hydroxy] group is attached to an alkyl group.

The ionisation of alcohol and a phenol takes place as follows:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 39
Due to the higher electronegativity of sp2 hybridised carbon of phenol to which -OH is attached, electron density decreases on oxygen. This increases the polarity of the O-H bond and results in an increase in ionisation of phenols than that of alcohols. Now let us examine the stabilities of alkoxide and phenoxide ions. In alkoxide ion, the negative charge is localised on oxygen while in phenoxide ions, the charge is delocalised.

The delocalisation of negative charge (structures I-V) makes phenoxide ion more stable and favours the ionisation of phenol. Although there is also charge delocalisation in phenol its resonance structures have charge separation due to which the phenol molecule is less stable than phenoxide ion.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 40
In substituted phenols, the presence of electron-withdrawing groups such as the nitro group enhances the acidic strength of phenol. This effect is more pronounced when such a group is present at ortho and para positions. It is due to the effective delocalisation of negative charge in phenoxide ion.

On the other hand, electron releasing groups, such as alkyl groups, in general, do not favour the formation of phenoxide ion resulting in a decrease in acid strength. Cresols, for example, are less acidic than phenol.

Table 11.3: pKa Values of Some Phenols and Ethanol:

Compound Formula pKa
o-Nitrophenol 0-O2N-C6H4-OH 7.2
m-Nitrophenol m-O2N-C6H4-0H 8.3
p-Nitrophenol p-O2N-C6H4-0H 7.1
Phenol C6H5-OH 10.0
o-Cresol O-CH3-C6H4-OH 10.2
m-Cresol m-CH3C6H4-OH 10.1
p-Cresol p-CH3-C6H4-OH 10.2
Ethanol C2H5OH 15.9

From the above data, you will note that phenol is a million times more acidic than ethanol.

2. Esterification: Alcohols and phenols react with carboxylic acids, acid chlorides and acid anhydrides to form esters.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 41
The introduction of acetyl (CH3 CO) group in alcohols or phenols is known as acetylation. Acetylation of salicylic acid produces aspirin which possesses analgesic, anti-inflammatory and antipyretic properties.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 42
(b) Reactions involving cleavage of C-O bond in alcohols.
1. Reaction with HX:
ROH + HX → R-X + H2O.

Luca’s Test distinguishes the three classes of alcohols (1°, 2° and 3°) on reaction with cone. HCl and ZnCl2 [Luca’s reagent], 3° alcohols produce turbidity immediately with it. 2° alcohols do it after some time. 1° alcohol does not produce turbidity at room temperatures.

2. Reactions with phosphorus trihalides:
3R-OH + PCl3 → 3R-Cl + H3P03
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 43
3. Reaction with a protic acid: e.g., cone. H3P04 or H2SO4 causes dehydration of alcohols producing alkenes.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 44
Thus the relative ease of dehydration of alcohols follows the order Tertiary > Secondary > Primary

Mechanism of dehydration of alcohols:
→ Step I: Formation of protonated alcohol
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 45
→ Step II: Formation of the carbocation. It is the slow step and hence the rate-determining step.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 46
→ Step III: Formation of ethene by loss of a proton.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 47
4. Oxidation:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 48
(PCC is pyridinium chlorochromate-a complex of chromium oxide with pyridine and HCl)
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 49
Tertiary alcohols do not undergo oxidation reactions.

5. Dehydrogenation with red hot copper: I° and 2c alcohol form aldehydes and ketones respectively. 3° alcohols undergo dehydration.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 50
(c) Reactions of Phenols:
Following reactions are shown by phenols only.
1. Electrophilic aromatic substitution: The —OH group fused in the ring activates the ring towards electrophilic substitution directing the incoming group at ortho and para positions.
1. Nitration:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 51
The o- and p-isomers can be separated by steam distillation, o-, Nitrophenol is steam volatile due to intramolecular H-bonding while p-nitrophenol (Higher B.Pt) is less volatile due to intermolecular H- bonding which causes the association molecules.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 52
2. Halogenation:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 53
Reaction with Bromine water is used as a test of phenol.

2. Koibe’s reaction:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 54
3. Reimer-Tiemann reaction: Salicylaldehyde is formed.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 55
4. Reaction with zinc dust: Benzene is formed.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 56
5. Oxidation:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 57
Some Commercially Important Alcohols:
1. Methanol (CH3OH): It is also known as wood-spirit.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 58
Properties: It is a colourless liquid. It boils at 337 K. It is highly poisonous in nature. Ingestion of even small quantities causes blindness and large quantities cause even death.

Uses:

  • It is used as a solvent in paints, varnishes etc.
  • It is chiefly used for making formaldehyde.

2. Ethanol (C2H5OH):
Commercial Preparation: By fermentation of molasses
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 59
Properties:

  1. It is a colourless liquid with B.Pt 351 K.
  2. Combined with CuSO4 and pyridine, it is termed as denatured spirit

Uses:

  • It is an excellent solvent.
  • In the laboratory and hospitals for sterilisation of surgical instruments.

Ethers:
Preparation of Ethers:
1. By dehydration of alcohols:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 60
It is a nucleophilic bimolecular reaction (SN2)

Step:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 61
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 62
2. Willamson synthesis of ethers: It is an important laboratory method for the preparation of symmetrical and unsymmetrical ethers.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 63
It involves the SN2 attack of an alkoxide ion on primary alkyl halide.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 64
Physical Properties of ethers:

  1. The C-O bonds in ethers are polar and thus ethers have a net dipole moment.
  2. Their b. pts are comparable to those of alkanes with comparable molecular masses but lower than those of alcohols. It is due to the lack of H-bonding in ethers.Alcohols, Phenols and Ethers Class 12 Notes Chemistry 65
  3. The miscibility of ethers with water resembles those of alcohols of the same molar mass. It is due to the fact that-ethers like alcohols can form H-bonds with water.
    Alcohols, Phenols and Ethers Class 12 Notes Chemistry 66

Chemical Reactions: Ethers are the least reactive of the functional groups.
1. Cleavage of C-O bond in ethers-lire the cleavage of C-O bond in ethers takes place under drastic conditions with an excess of hydrogen halides.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 67
The order of reactivity is HI > HBr > HCl.

Mechanism:
→ Step I:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 68
→ Step II:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 69
With HI in excess and at a high temp., ethanol reacts with another molecule of HI and is converted to ethyl iodide.

→ Step III:
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 70
However, when one of the alkyl groups is tertiary, the halide formed is a tertiary halide.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 71
It is because, in step-2 of the reaction, the departure of leaving group (HO- CH3) creates a more stable carbocation [(CH3)3 C+] and the reaction follows the SN1 mechanism.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 72
2. Electrophilic substitution: The alkoxy group (-OR) is ortho and para directing and activates the aromatic ring towards electrophilic substitution.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 73
1. Halogenation: Phenylalkyl ethers undergo usual halogenation in the benzene ring, e.g., anisole undergoes bromination with bromine in ethanoic acid even in absence of iron (III) bromide catalyst. It is due to the activation of the benzene ring by the methoxy group. Para isomer is obtained in 90% yield.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 74
2. Friedel Crafts reaction: Anisole undergoes Friedel Crafts reaction, i.e., the alkyl and acyl groups are introduced at ortho and para positions by reaction with an alkyl halide and acyl halide in the presence of anhydrous aluminium chloride (a Lewis acid) as a catalyst.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 75
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 76
3. Nitration: Anisole reacts with a mixture of the cone. H2SO4 and HNO3 to yield a mixture of ortho and para nitro anisole.
Alcohols, Phenols and Ethers Class 12 Notes Chemistry 77

Medical Opportunistic Mycosis

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Medical Opportunistic Mycosis

The opportunistic systemic mycoses are infections found in patients with underlying pre disposing conditions. It is produced by non pathogenic or contaminant fungi in a host, where the immunological defense mechanisms are weakened by endogenous causes like cancer, leukemia or exogenous causes
like immunosuppressive therapy and AIDS. The examples of opportunistic mycoses are Candidiasis, Cryptococcosis, Aspergillosis and zygomycosis.

Candidiasis

Candidiasis is the commonest fungal disease found in humans affecting mucosa, skin, nails and internal organs of the body. It is caused by yeast like fungi called Candida albicans. The infection may be acute or chronic, superficial or deep and found mainly as secondary infection in individuals with immune compromised condition.

Pathogenesis and Pathology

Some of the virulence factors contributing to pathogenicity are toxins, enzymes and adhesion. The organism adheres to the epithelial and endothelial cells by proteinase production.

Then the yeast cells of Candida encounter a particular host tissue and colonization takes place at the local site or they invade deeper into the host tissue and induce various clinical symptoms.

Clinical Features

The Candida species are found as commensal on mucosal surfaces of the body. They cause disease as and when conditions are favourable. This yeast like fungi colonizes mucocutaneous surfaces, which can be portals of entry into deeper tissues when the host defenses are compromised. They may cause a simple lesion to event the life threatening systemic infection.

The clinical manifestations of Candidiasis are divided into two broad categories. They are:

1. Infectious Diseases

a. Mucocutaneous Involvement

i. Oral Candidiasis:

Most common form of Candida colonizes on the oral cavity. Oral thrush is infection of the buccal mucosa, gums, tongue. Reddening of the mucous membrane gives dry, smooth metallic taste and burning at the local site (Figure 9.9).
Medical Opportunistic Mycosis img 1

ii. Alimentary Candidiasis:

Candida colonizes on the oesophagus causing oesophagitis. It is mostly asymptomatic or it may cause burning pain in the epigastrium or throat.

b. Cutaneous Dermatitis

i. Diaper Dermatitis:

Candida that colonize on the cutaneous layer causes cutaneous Candidiasis, leading to maculopapules vesicles with erythematous rash. This is common among infants and known as Diaper rash.

ii. Intertrigo:

This is an inflammatory lesion of the skin folds due to candidal infection.

c. Systemic Involvement:

The Candida colonizes in various organs and causes various manifestations through the blood stream. Clinical features are found to be Urinary tract Candidiasis, Candiduria, Endocarditis, Pulmonary Candidiasis, Arthritis, Osteomyelitis, Meningitis, Candidemia and Septicemia.

2. Allergic Diseases

Allergic manifestation is caused due to the metabolites of Candida. The cutaneous allergies are urticaria and eczema, and bronchial asthma.

Laboratory Diagnosis

i. Samples

Specimens collected are mucous membrane from the mouth, vagina, skin and sputum based on the site of involvement.

a. Direct Examination

Gram staining LPCB, and KOH wet mount are used to visualize the yeast cells. Presence of yeast cells approximately 4.8 µm with budding and pseudo hyphae are observed. Other stains like periodic acid – Schiff stain and Gomori’s methylamine silver stain are also used to observe the fungal elements in tissue.

b. Fungal culture

The clinical specimens can be cultured on Sabouraud dextrose agar (SDA) with antibiotics and incubated at 25°C and 37°C (Figure 9.10). The colonies appear in 3-4 days as cream coloured, smooth and pasty. Some of the species of Candida are Candida albicans, Candida tropicalis, Candida krusei and Candida glabrata.
Medical Opportunistic Mycosis img 2

ii. Special Test

Germ tube test The culture of Candida species is treated with sheep or normal human serum and inoculated at 37°C for 2 to 4 hours. A drop of suspension is examined on the slide. The germ tubes are seen as long tube-like projections extending from the yeast cells. The demonstration of the germ tube is known as Reynolds – Braude phenomenon.

Biochemical tests

Sugar fermentation and assimilation tests are used for the identification of Candidal species. C.albicans ferments Glucose and Maltose and assimilates Glucose, Maltose, Sucrose, Lactose and Galactose.

Chlamydospores formation

Candida isolates are grown on corn meal, agar (CHN) or rice starch agar (RSA) and incubated at 25°C for 2-3 days. The formation of large, thick walled terminal chlamydospores is demonstrated in C.albicans and C. dubliniensis.

iii. Treatment

  • 1% gentian violet is locally applied to the affected areas.
  • The azole creams like Clotrimazole, Miconazole, Ketoconazole and Econazole are also used.

Cryptococcosis

Cryptococcosis is an acute, sub acute or chronic fungal disease caused by encapsulated yeast called Cryptococcus neoformans. It is pathogenic to man and animals. It causes opportunistic infection, involving the lungs and disseminates to extra pulmonary sites through circulation to different body organs particularly to central nervous system causing Meningoencephalitis.

Pathogenesis and Pathology

Cryptococcal infection occurs through inhalation of small forms or basidiospores. The fungus may remain dormant in the lungs until the immune system weakens and then can disseminate to the central nervous system and other body sites.

Clinical Features

The clinical features of Cryptococcosis depend upon the anatomical sites.

i. Pulmonary Cryptococcosis

The respiratory route is usually the portal of entry for propagules in Pulmonary Cryptococcosis that subsequently disseminate to extra pulmonary sites. The symptoms are dry cough, dull chest pain and milder or no fever with small gelatinous granules all over the lungs.

ii. CNS Cryptococcosis

This is an infection of brain and meninges leading to Meningoencephalitis. Nitrogenous source such as asparagines and creatinine present in cerebrospinal fluid enrich the yeast. The symptoms are nausea, dizziness, impaired memory, blurred vision and photophobia. The enlarged granulomatous cerebral lesions
are called cryptococcoma.

iii. Visceral Cryptococcosis

This infection usually spreads from a primary focus to invade the optic nerve and meninges. Visual loss in patients is due to intra cranial pressure. There are two distinct patterns of visual loss namely; rapid visual loss (within 12 hrs) and slow visual loss (within weeks to months).

Laboratory Diagnosis

i. Samples

Specimens collected are mainly serum, CSF and other body fluids.

a. Direct Examination

10% Nigrosin or India ink staining, Gram staining and LPCB are used to visualize the yeast cell.

Biopsy material is stained with periodic acid – Schiff and Gomoris’s methylamine silver stain to observe the fungal cells in the tissue. Round budding yeast cells with a distinct halo gelatinous capsule can be seen (Figure 9.11a). Gram positive budding yeast cells are demonstrated by Gram staining.
Medical Opportunistic Mycosis img 3

b. Fungal Culture

The clinical specimens can be cultured on Sabouraud dextrose agar, Bird Seed agar and incubated at 37°C. The colonies are mucoid, cream to buff – colored in SDA (Figure 9.11b), whereas brown colored due to conversion of the substrate into melanin by Phenoloxidase in BSA (Figure 9.11c).

ii. Treatment

  • Amphotericin B, Flucytosine is given together as induction and maintenance therapy.
  • Fluconazole is also recommended.

Systemic Mycosis

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Systemic Mycosis

Systemic mycoses are caused by dimorphic fungi; these infections are acquired by inhalation of spores. These primarily involve the respiratory system and are self-limiting and asymptomatic. If symptomatic, it spreads to other parts of body through circulation. These infections are caused by true fungal pathogens.

Systemic and opportunistic infections together cause Deep mycoses. The organisms have a mycelial form when grown on fungal culture and have yeast form in the tissue. The examples of systemic mycoses are Histoplasmosis, Blastomycosis.

Histoplasmosis

Histoplasmosis is caused by dimorphic fungus Histoplasma capsulatum. The fungi live inside the cells of the reticuloendothelial system, where they grow within macrophages and giant cells. This infection is also known as Darling’s disease.

Pathogenesis and Pathology

The infection with H. capsulatum develops when conidia or mycelial fragments are inhaled and converted into yeasts in alveolar macrophages in the lungs. The oval yeast cells parasitize macrophages, which are activated by T lymphocytes resulting in localized granulomatous inflammation.

Clinical Features

The disease is mostly asymptomatic. The development of symptom or symptomatic disease appears to depend on the intensity of exposure to conidia and cellular immune response of the host. The disease may be classified as follows.

  1. Acute pulmonary Histoplasmosis – Fever, headache, chills, sweating, chest pain, cough and dyspnoea.
  2. Chronic pulmonary Histoplasmosis – Ulcerative lesions of the lips, mouth, nose, larynx and intestines.
  3. Cutaneous, mucocutaneous Histoplasmosis – Mucous lesions on skin, abdomen wall and thorax.
  4. Disseminated Histoplasmosis – Fever, anoxia, anemia, leucopenia constant hepatosplenomegaly and multiple lymphadenopathies.

Laboratory Diagnosis

i. Samples

Specimens collected are sputum, bone marrow and lymph nodes, cutaneous and mucosal lesions and peripheral blood film.

a. Direct Examination

Thick and thin smears should be prepared from peripheral blood, bone marrow and stained with Calcofluor white, Giemsa or Wright stains. The fungus is small, oval yeast like cells, 2-4 µm in diameter, within the mononuclear or polymorpho nuclear cells and occasionally in giant cells.

b. Fungal culture

The clinical samples is inoculated on Sabouraud dextrose agar (SDA) and Brain-heart infusion (BHI) agar with antibiotics and actidione at 25°C and 37°C. On Sabourad dextrose agar the colonies appear albino or brown.

The albino type consists of white, fine aerial hyphae and brown type consists of flat colonies with light tan or dark brown in color in seven days. At 37°C the colonies grow as granular to rough, mucoid and cream-colored turning tan to brown in 14 days.

ii. Treatment

Amphotericin B is given for the treatment of disseminated and other severe forms of Histoplasmosis.

Subcutaneous Mycoses

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Subcutaneous Mycoses

Dermatophytoses are the most common cutaneous fungal infection seen in man and animals affecting skin, hair and nails. The fungi can invade the keratinized tissues of skin and its appendages and they are collectively known as Dermatophytes or Tinea or ring worm infection.

The dermatophytes are hyaline septate molds. They are divided into three main anamorphic genera depending on their morphological characteristics.

  • Trichophyton [Cause infection in skin, hair and nails]
  • Microsporum [Cause infection in skin and hair]
  • Epidermophyton [cause infection in skin and nail]

The fungal species affecting humans are known as anthropophilic. Those inhabitating domestic and wild animals as well as birds are called zoophilic. Fungi species from soil are known as geophilic dermatophytes.

Pathogenesis and Pathology

The dermatophytes grow within dead keratinized tissue and produce keratinolytic proteases, which provide means of entry into living cells. Fungal metabolic products cause erythema, vesicles and pustule on the site of infection. Some dermatophytes species like soil saprobes digest the keratinaceous debris in soil and are capable of parasitizing keratinous tissues of animals.

Clinical Features

The clinical manifestations of Dermatophytoses are also called Tinea or Ringworm depending on the anatomical site involved. Following are the common clinical conditions produced by dermatophytes:

1. Tinea Capitis:

This is an infection of the shaft of scalp hairs. It can be inflammatory (eg. Kerion, Favus) or non – inflammatory (Black dot, Seborrheic dermatitis). The infected hairs appear dull and grey (Figure 9.5 a). Breakage of hair at follicular orifice which creates patches of alopecia with black dots of broken hair. It is caused by Trichophyton species.
Subcutaneous Mycoses img 1

2. Tinea Corporis:

This is an infection on the glabrous (non – hairy) skin of body. Erythematous scaly lesions with sharply marginated raised border appear on the infected areas (Figure 9.5 b). It is caused by Trichophyton rubrum.
Subcutaneous Mycoses img 2

3. Tinea Imbricata:

It forms concentric rings of scaling on the glabrous skin, leading to lichenification. It is caused by Trichophyton concentricum.

4. Tinea Gladiatorum:

This infection is common among wrestlers and athletes. Lesions are seen on arms, trunk or head and neck. It is caused by Trichophyton tonsurans.

5. Tinea Incognito:

It is steroid modified Tinea caused as a result of misuse of corticosteroids in combination with topical antimycotic drugs.

6. Tinea Faciei:

This is an infection of skin of face except beard. Erythematous annular plaques are formed. It is one of the forms of Tinea incognito.

7. Tinea Barbae:

This is the infection of the beard and moustache areas of the face. This is also called barber’s itch. It is caused by Trichophyton mentagrophytes, Trichophyton rubrum and Microsporum canis. Erythematous patches on the face with scaling appear and these develop folliculitis.

8. Tinea Pedis:

This is an infection of the foot, toes and interdigital web spaces. This is seen among the individuals wearing shoes for long hours and known as Athlete’s foot (Figure 9.5 c). Erythema and scaling associated with itching and burning sensation appear with thin fluid discharging from small vesicles. It is caused by Trichophyton mentagrophytes, Trichophyton rubrum and Epidermophyton floccosum.
Subcutaneous Mycoses img 3

9. Tinea Cruris:

This is an infection of the groin in men who use long term tight fitting garments. Erythematous sharp margin lesions known as Jock itch. It is caused by Trichophyton rubrum and Epidermophyton floccosum.

10. Tinea Manuum:

This is an infection of the skin of palmar aspect of hands. It causes hyperkeratosis of the palms and fingers. It is caused by Trichophyton mentagrophytes, Trichophyton rubrum and Epidermophyton floccosum.

11. Tinea Unguium:

This is an infection of the nail plates. The infection spreads on the entire nail plate infecting the nail bed. It results in opaque, chalky or yellowish thick ended nail. It is caused by Trichophyton mentagrophytes, Trichophyton rubrum and Epidermophyton floccosum. Figure 9.6 shows the microscopic view of major determatophytes.
Subcutaneous Mycoses img 4

Laboratory Diagnosis

i. Samples

Skin scrapings, hair and nail samples were collected.

a. Direct Examination

Samples are subjected to KOH (10%) wet mount, the affected site were disinfected with alcohol before collecting the clinical specimen.

b. Fungal culture

The samples are inoculated on Sabouraud dextrose agar (SDA) with antibiotics and cycloheximide and are incubated at 25°C-35°C. The colony morphology can be identified.

The three genera of dermatophytes are Trichophyton, Microsporum and Epidermophyton (Table 9.1). They are identified based on morphology of the macro conidia, micro conidia, their shape, position on the spore bearing hyphae such as spiral hypha, racquet hypha, nodular pectinate body.

Table 9.1: Microscopic and macroscopic characteristics of Dermatophytes.
Subcutaneous Mycoses img 5

ii. Special Techniques

1. Wood’s Lamp Examination

Clinical samples are exposed to Wood’s lamp. Wood’s glass consists of Barium silicate containing 9% Nickel oxide. It transmits long wave ultra violet light with a peak of 365 nm that shows a characteristic fluorescence produced by the samples. The patterns of fluorescence are bright green, golden yellow and coral red. Microsporum species and Trichophyton species are differentiated using this technique.

2. Hair brush sampling Technique

It involves brushing the scalp with a sterile plastic hair brush, which is then inoculated into an appropriate culture medium by plates, is incubated at 25°C-35°C. The colony morphology can be identified.

3. Hair perforation Test

It is used to differentiate T. mentagrophytes and T. rubrum. Wedge-shaped perforations in the hair shaft are observed in hair infected with T. mentagrophytes.

4. Urease Test

It is used to differentiate between T. mentagrophytes and T. rubrum. T. mentagrophytes hydrolyzes urea and becomes deep red, showing positive result.

iii. Treatment

Whitfield’s ointment is used for all Tinea infections. Oral griseofulvin is the drug of choice for nails and scalp infections. Itraconazole and terbinafine may be given as pulse therapy.

Superficial Cutaneous Mycosis

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Superficial Cutaneous Mycosis

The superficial cutaneous fungal infections involve the outer most layers of skin and its appendages like hair and nails. The causative agents colonize on epidermis or supra – follicular portions of hair and do not penetrate into deeper layers.

The genus Malassezia is responsible for the superficial infection of the skin. Malassezia furfur is lipophilic yeast. It is a commensal of normal skin in the sebaceous glands of warm – blooded vertebrates.

It may be pathogenic under certain conditions usually causing skin conditions like Pityriasis versicolor, Seborrheic dermatitis, Atopic dermatitis, Malassezia folliculitis and systemic infection. Symptoms include macular, erythematous, hyper pigmented or hypo pigmented lesions with fine scaling.

Tinea nigra is responsible for the superficial cutaneous infection of the skin. Hortaea werneckii is the phaeoid (dematiaceous) fungi causes infection on the palms and soles. It is also commonly termed as Tinea nigra palmaris and Tinea nigra plantaris. Symptoms includes brown to black deeply pigmented non – scaly, macular lesions affecting skin of the palms and occasionally soles.

Piedra causes superficial infection of hair shaft. The word Piedra is derived from Spanish word Stone. There are two types of Piedra based on causative fungi and characteristics of nodules. They are Black piedra caused by Piedraia hortae and White piedra caused by Trichosporon species.

The symptoms include development of firm, irregular nodules of fungal elements cemented to the hair. The piedra can be distinguished on the basis of shape, size and pigmentation of fungal cells of nodules which are found around hair cortex.